Articles scientifiques

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Elena Angulo, Christophe Diagne, Liliana Ballesteros-Mejia, Tasnime Adamjy, Danish A Ahmed, et al.. Non-English languages enrich scientific knowledge: The example of economic costs of biological invasions. Science of the Total Environment, Elsevier, 2021, 775, pp.144441. ⟨10.1016/j.scitotenv.2020.144441⟩. ⟨hal-03192043⟩
Mark Zwart, Stéphane Blanc, Marcelle Johnson, Susanna Manrubia, Yannis Michalakis, et al.. Unresolved advantages of multipartitism in spatially structured environments. Virus Evolution, Oxford University Press, 2021, 7 (1), ⟨10.1093/ve/veab004⟩. ⟨hal-03219672⟩
Stéphanie Haim-Boukobza, Bénédicte Roquebert, Sabine Trombert-Paolantoni, Emmanuel Lecorche, Laura Verdurme, et al.. Detecting Rapid Spread of SARS-CoV-2 Variants, France, January 26–February 16, 2021. Emerging Infectious Diseases, Centers for Disease Control and Prevention, 2021, 27 (5), pp.1496-1499. ⟨10.1101/2021.02.20.21251927⟩. ⟨hal-03150819v2⟩
Christophe Diagne, Boris Leroy, Anne-Charlotte Vaissière, Rodolphe Gozlan, David Roiz, et al.. High and rising economic costs of biological invasions worldwide. Nature, Nature Publishing Group, 2021, 592 (7855), pp.571-576. ⟨10.1038/s41586-021-03405-6⟩. ⟨hal-03217121⟩
Olivier Roux, D Renault, Karine Mouline, Abdoulaye Diabaté, Frédéric Simard. Living with predators at the larval stage has differential long-lasting effects on adult life history and physiological traits in two anopheline mosquito species. Journal of Insect Physiology, Elsevier, 2021, 131, pp.104234. ⟨10.1016/j.jinsphys.2021.104234⟩. ⟨hal-03222789⟩
Julien Cattel, Chloé Haberkorn, Fréderic Laporte, Thierry Gaude, Tristan Cumer, et al.. A genomic amplification affecting a carboxylesterase gene cluster confers organophosphate resistance in the mosquito Aedes aegypti : From genomic characterization to high‐throughput field detection. Evolutionary Applications, Blackwell, 2021, 14 (4), pp.1009-1022. ⟨10.1111/eva.13177⟩. ⟨pasteur-03209039⟩
Sébastien Boyer, Benoit Durand, Sony Yean, Cécile Brengues, Pierre-Olivier Maquart, et al.. Host-Feeding Preference and Diel Activity of Mosquito Vectors of the Japanese Encephalitis Virus in Rural Cambodia. Pathogens, MDPI, 2021, 10 (3), pp.376. ⟨10.3390/pathogens10030376⟩. ⟨pasteur-03209045⟩
Joa Mangombi, Nadine N’dilimabaka, Jean-Bernard Lékana-Douki, Octavie Banga, Sydney Maghendji-Nzondo, et al.. First investigation of pathogenic bacteria, protozoa and viruses in rodents and shrews in context of forest-savannah-urban areas interface in the city of Franceville (Gabon). PLoS ONE, Public Library of Science, 2021, 16 (3), pp.e0248244. ⟨10.1371/journal.pone.0248244⟩. ⟨hal-03180884⟩
Quentin Richard, Samuel Alizon, Marc Choisy, Mircea Sofonea, Ramsès Djidjou-Demasse. Age-structured non-pharmaceutical interventions for optimal control of COVID-19 epidemic. PLoS Computational Biology, Public Library of Science, 2021, ⟨10.1371/journal.pcbi.1008776⟩. ⟨hal-02879512v2⟩
Sebastian Kirchhof, Mariana Lyra, Ariel Rodríguez, Ivan Ineich, Johannes Müller, et al.. Mitogenome analyses elucidate the evolutionary relationships of a probable Eocene wet tropics relic in the xerophile lizard genus Acanthodactylus. Scientific Reports, Nature Publishing Group, 2021, 11 (1), ⟨10.1038/s41598-021-83422-7⟩. ⟨hal-03157890⟩
Pascal Pujol, Massimo Barberis, Philp Beer, Eitan Friedman, Josep Piulats, et al.. Clinical practice guidelines for BRCA1 and BRCA2 genetic testing. European Journal of Cancer, Elsevier, 2021, 146, pp.30-47. ⟨10.1016/j.ejca.2020.12.023⟩. ⟨hal-03225540⟩
Marie-Pierre Brenier-Pinchart, Emmanuelle Varlet-Marie, Florence Robert-Gangneux, Denis Filisetti, Juliette Guitard, et al.. Impact of pre-analytic step duration on molecular diagnosis of toxoplasmosis for five types of biological samples. PLoS ONE, Public Library of Science, 2021, 16 (2), pp.e0246802. ⟨10.1371/journal.pone.0246802⟩. ⟨hal-03147137⟩
Antoine Dujon, Athena Aktipis, Catherine Alix‐panabières, Sarah Amend, Amy Boddy, et al.. Identifying key questions in the ecology and evolution of cancer. Evolutionary Applications, Blackwell, 2021, ⟨10.1111/eva.13190⟩. ⟨hal-03164823⟩
Ramsès Djidjou-Demasse, Samuel Alizon, Mircea Sofonea. Within-host bacterial growth dynamics with both mutation and horizontal gene transfer. Journal of Mathematical Biology, Springer Verlag (Germany), 2021, ⟨10.1007/s00285-021-01571-9⟩. ⟨hal-02500420⟩
Samuel Alizon. Superspreading genomes. Science, American Association for the Advancement of Science, 2021, 371 (6529), pp.574-575. ⟨10.1126/science.abg0100⟩. ⟨hal-03133445⟩
Marisa Peyre, Gwenaël Vourc'H, Thierry Lefrançois, Yves Martin-Prével, Jean-François Soussana, et al.. PREZODE: preventing zoonotic disease emergence. The Lancet, Elsevier, 2021, 397 (10276), pp.792-793. ⟨10.1016/S0140-6736(21)00265-8⟩. ⟨hal-03155118⟩
Alissa Hammoud, Meriem Louni, Mamadou Cellou Baldé, Abdoul Habib Beavogui, Philippe Gautret, et al.. Molecular Characterization and Genetic Diversity of Haplogroup E Human Lice in Guinea, West Africa. Microorganisms, MDPI, 2021, 9 (2), pp.257. ⟨10.3390/microorganisms9020257⟩. ⟨hal-03215453⟩
Bernard Cazelles, Catherine Comiskey, Benjamin Nguyen-Van-Yen, Clara Champagne, Benjamin Roche. Parallel trends in the transmission of SARS-CoV-2 and retail/recreation and public transport mobility during non-lockdown periods. International Journal of Infectious Diseases, Elsevier, 2021, 104, pp.693-695. ⟨10.1016/j.ijid.2021.01.067⟩. ⟨hal-03134842v2⟩
Romain Blaizot, Stéphane Simon, Marine Ginouves, Ghislaine Prévôt, Denis Blanchet, et al.. Validation of Swab Sampling and SYBR Green-Based Real-Time PCR for the Diagnosis of Cutaneous Leishmaniasis in French Guiana. Journal of Clinical Microbiology, American Society for Microbiology, 2021, 59 (2), ⟨10.1128/JCM.02218-20⟩. ⟨hal-03145154⟩
Ceren Simsek, Victor Max Corman, Hermann Ulrich Everling, Alexander N Lukashev, Andrea Rasche, et al.. At Least Seven Distinct Rotavirus Genotype Constellations in Bats with Evidence of Reassortment and Zoonotic Transmissions. mBio, 2021, 12 (1), ⟨10.1128/mbio.02755-20⟩. ⟨hal-03139125⟩
Marie Buysse, Maxime Duhayon, Franck Cantet, Matteo Bonazzi, Olivier Duron. Vector competence of the African argasid tick Ornithodoros moubata for the Q fever agent Coxiella burnetii. PLoS Neglected Tropical Diseases, Public Library of Science, 2021, 15 (1), pp.e0009008. ⟨10.1371/journal.pntd.0009008⟩. ⟨hal-03134571⟩
Léa Douchet, Marion Haramboure, Thierry Baldet, Gregory L’ambert, David Damiens, et al.. Comparing sterile male releases and other methods for integrated control of the tiger mosquito in temperate and tropical climates. Scientific Reports, Nature Publishing Group, 2021, 11, pp.7354. ⟨10.1038/s41598-021-86798-8⟩. ⟨hal-03188096⟩
P.O. Maquart, Didier Fontenille, S. Boyer. Recent and massive invasion of Aedes (Stegomyia) albopictus (Skuse, 1894) in Phnom Penh, Cambodia. Parasites and Vectors, BioMed Central, 2021, 14, pp.113. ⟨10.1186/s13071-021-04633-5⟩. ⟨hal-03170217⟩
Illich Mombo, Larson Boundenga, Eloise Suquet, Barthélémy Ngoubangoye, Gaël Maganga, et al.. Natural infection of free-ranging mandrills (Mandrillus sphinx) by enteroviruses and astroviruses in southern Gabon. Microbial Pathogenesis, Elsevier, 2021, 150, pp.104659. ⟨10.1016/j.micpath.2020.104659⟩. ⟨hal-03065952⟩
Anais Goulas, Drifa Belhadi, Alexandre Descamps, Antoine Andremont, Pierre Benoit, et al.. Correction to: How effective are strategies to control the dissemination of antibiotic resistance in the environment? A systematic review (vol 9, 4, 2020). Environmental Evidence, 2021, 10 (1), pp.9. ⟨10.1186/s13750-021-00222-2⟩. ⟨hal-03216922⟩
Dieudonné Diloma Soma, Serge Bèwadéyir Poda, Aristide Sawdetuo Hien, Moussa Namountougou, Ibrahim Sangaré, et al.. Malaria vectors diversity, insecticide resistance and transmission during the rainy season in peri-urban villages of south-western Burkina Faso. Malaria Journal, BioMed Central, 2021, 20 (1), ⟨10.1186/s12936-020-03554-5⟩. ⟨hal-03121860⟩
Dieudonné Diloma Soma, Barnabas Zogo, Domonbabele François de Sales Hien, Aristide Sawdetuo Hien, Didier Alexandre Kaboré, et al.. Insecticide resistance status of malaria vectors Anopheles gambiae (s.l.) of southwest Burkina Faso and residual efficacy of indoor residual spraying with microencapsulated pirimiphos-methyl insecticide. Parasites & Vectors, 2021, 14 (1), ⟨10.1186/s13071-020-04563-8⟩. ⟨hal-03121868⟩
D. Soma, B. Zogo, P. Taconet, A. Somé, S. Coulibaly., et al.. Quantifying and characterizing hourly human exposure to malaria vectors bites to address residual malaria transmission during dry and rainy seasons in rural Southwest Burkina Faso. BMC Public Health, BioMed Central, 2021, 21 (1), ⟨10.1186/s12889-021-10304-y⟩. ⟨hal-03126810⟩
Ciara Baines, Adelaide Lerebours, Frédéric Thomas, Jérôme Fort, Randel Kreitsberg, et al.. Linking pollution and cancer in aquatic environments: A review. Environment International, Elsevier, 2021, 149, pp.106391. ⟨10.1016/j.envint.2021.106391⟩. ⟨hal-03126622⟩
Clélia Oliva, Mark Benedict, C Matilda Collins, Thierry Baldet, Romeo Bellini, et al.. Sterile Insect Technique (SIT) against Aedes Species Mosquitoes: A Roadmap and Good Practice Framework for Designing, Implementing and Evaluating Pilot Field Trials. Insects, MDPI, 2021, 12 (3), pp.191. ⟨10.3390/insects12030191⟩. ⟨hal-03151766⟩
Pauline Ezanno, Sébastien Picault, Gaël Beaunée, Xavier Bailly, Facundo Muñoz, et al.. Research perspectives on animal health in the era of artificial intelligence. Veterinary Research, BioMed Central, 2021, 52 (1), pp.40. ⟨10.1186/s13567-021-00902-4⟩. ⟨hal-03161705⟩
Sara Nicolás-Párraga, Montserrat Torres, Laia Alemany, Ana Félix, Eugenia Cruz, et al.. Human DNA decays faster with time than viral dsDNA: an analysis on HPV16 using pathology archive samples spanning 85 years. Virology Journal, BioMed Central, 2021, 18, pp.65. ⟨10.1186/s12985-021-01529-9⟩. ⟨hal-03184526⟩
Antoine Perrin, Aurélie Khimoun, Bruno Faivre, Anthony Ollivier, Nyls de Pracontal, et al.. Habitat fragmentation differentially shapes neutral and immune gene variation in a tropical bird species. Heredity, Nature Publishing Group, 2021, 126, pp.148-162. ⟨10.1038/s41437-020-00366-w⟩. ⟨hal-03002638⟩
Sokleaph Cheng, Mallorie Hide, Sok Heng Pheng, Alexandra Kerléguer, Gauthier Delvallez, et al.. Resistance to Second-Line Anti-TB Drugs in Cambodia: A Phenotypic and Genetic Study. Infection and Drug Resistance, Dove Medical Press, 2021, Volume 14, pp.1089-1104. ⟨10.2147/IDR.S289907⟩. ⟨hal-03204662⟩
Oumar Ouchar Mahamat, Marie Kempf, Manon Lounnas, Abelsalam Tidjani, Mallorie Hide, et al.. Epidemiology and prevalence of extended-spectrum β-lactamase- and carbapenemase-producing Enterobacteriaceae in humans, animals and the environment in West and Central Africa. International Journal of Antimicrobial Agents, Elsevier, 2021, 57 (1), pp.106203. ⟨10.1016/j.ijantimicag.2020.106203⟩. ⟨hal-03204733⟩
Mohammad Akhoundi, Dahlia Chebbah, Denis Sereno, Anthony Marteau, Julie Jan, et al.. Widespread Mutations in Voltage-Gated Sodium Channel Gene of Cimex lectularius (Hemiptera: Cimicidae) Populations in Paris. International Journal of Environmental Research and Public Health, MDPI, 2021, 18 (2), pp.407. ⟨10.3390/ijerph⟩. ⟨hal-03152065⟩
Jennifer Guiraud, Manon Lounnas, Anne Boissière, Chloé Le Roy, Eric Elguero, et al.. Lower mgpB diversity in macrolide-resistant Mycoplasma genitalium infecting men visiting two sexually transmitted infection clinics in Montpellier, France. Journal of Antimicrobial Chemotherapy, Oxford University Press (OUP), 2021, 76 (1), pp.43-47. ⟨10.1093/jac/dkaa410⟩. ⟨hal-03204675⟩
Michelle Evans, Andres Garchitorena, Rado Rakotonanahary, John Drake, Benjamin Andriamihaja, et al.. Reconciling model predictions with low reported cases of COVID-19 in Sub-Saharan Africa: insights from Madagascar. Global Health Action, Häggeby : Co-Action Publishing, 2020, 13 (1), pp.1816044. ⟨10.1080/16549716.2020.1816044⟩. ⟨hal-02998394⟩
Illich Mombo, Matthieu Fritz, Pierre Becquart, Florian Liégeois, Eric Elguero, et al.. Detection of Ebola Virus Antibodies in Fecal Samples of Great Apes in Gabon. Viruses, MDPI, 2020, 12 (12), pp.1347. ⟨10.3390/v12121347⟩. ⟨hal-03094065⟩
Eve Miguel, Vladimir Grosbois, Alexandre Caron, Diane Pople, Benjamin Roche, et al.. A systemic approach to assess the potential and risks of wildlife culling for infectious disease control. Communications Biology, Nature Publishing Group, 2020, 3 (1), ⟨10.1038/s42003-020-1032-z⟩. ⟨hal-02911618⟩
Anchana Sumarnrote, Hans Overgaard, Vincent Corbel, Kanutcharee Thanispong, Theeraphap Chareonviriyaphap, et al.. Species diversity and insecticide resistance within the Anopheles hyrcanus group in Ubon Ratchathani Province, Thailand. Parasites & Vectors, 2020, 13, pp.525. ⟨10.1186/s13071-020-04389-4⟩. ⟨hal-03083171⟩
Guillaume Bouyer, Daniela Barbieri, Florian Dupuy, Anthony Marteau, Abdoulaye Sissoko, et al.. Plasmodium falciparum sexual parasites regulate infected erythrocyte permeability. Communications Biology, Nature Publishing Group, 2020, 3 (1), ⟨10.1038/s42003-020-01454-7⟩. ⟨hal-03036079⟩
Anna Cohuet. L’efficacité des principaux répulsifs contre les moustiques les plus dangereux : Nouvelle stratégie de lutte ciblée contre les vecteurs les plus susceptibles de transmettre des pathogènes. Les cahiers de la Recherche. Santé, Environnement, Travail, ANSES, 2020, La lutte antivectorielle, pp.39-42. ⟨anses-03108485⟩
Jens Kuhn, Scott Adkins, Daniela Alioto, Sergey Alkhovsky, Gaya Amarasinghe, et al.. 2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales. Archives of Virology, Springer Verlag, 2020, 165 (12), pp.3023-3072. ⟨10.1007/s00705-020-04731-2⟩. ⟨pasteur-03112959⟩
Mohamed Aly Ould Lemrabott, Gilbert Le Goff, Pierre Kengne, Ousmane Ndiaye, Carlo Costantini, et al.. First report of Anopheles (Cellia) multicolor during a study of tolerance to salinity of Anopheles arabiensis larvae in Nouakchott, Mauritania. Parasites & Vectors, 2020, 13 (1), ⟨10.1186/s13071-020-04400-y⟩. ⟨hal-02998418⟩
Anne Poinsignon. Développement d’un test rapide mesurant l’exposition de l’homme aux piqûres d’Aedes albopictus : Développement d’un test rapide mesurant l’exposition de l’homme aux piqûres d’Aedes albopictus : contribution à l’évaluation du risque vectoriel et application à l’évaluation de l’efficacité des stratégies de lutte anti-vectorielle. Les cahiers de la Recherche. Santé, Environnement, Travail, ANSES, 2020, La lutte antivectorielle, pp.18-20. ⟨anses-03108795⟩
Ann Miller, Andres Garchitorena, Faramalala Rabemananjara, Laura Cordier, Marius Randriamanambintsoa, et al.. Factors associated with risk of developmental delay in preschool children in a setting with high rates of malnutrition: a cross-sectional analysis of data from the IHOPE study, Madagascar. BMC Pediatrics, BioMed Central, 2020, 20 (1), ⟨10.1186/s12887-020-1985-6⟩. ⟨hal-02998389⟩
Scott Small, Frédéric Labbé, Neil Lobo, Lizette L. Koekemoer, Chadwick Sikaala, et al.. Radiation with reticulation marks the origin of a major malaria vector. Proceedings of the National Academy of Sciences of the United States of America, 2020, 117 (50), pp.31583-31590. ⟨10.1073/pnas.2018142117⟩. ⟨hal-03088085⟩
Florian Binetruy, Marie Buysse, Roxanne Barosi, Olivier Duron. Novel Rickettsia genotypes in ticks in French Guiana, South America. Scientific Reports, Nature Publishing Group, 2020, 10 (1), ⟨10.1038/s41598-020-59488-0⟩. ⟨hal-03001765⟩
Felana Angella Ihantamalala, Vincent Herbreteau, Christophe Révillion, Mauricianot Randriamihaja, Jérémy Commins, et al.. Improving geographical accessibility modeling for operational use by local health actors. International Journal of Health Geographics, BioMed Central, 2020, 19 (1), ⟨10.1186/s12942-020-00220-6⟩. ⟨hal-02896309⟩
Kakou Aka, Dipomin Traoré, André Sagna, Dounin Zoh, Serge Assi, et al.. Pattern of antibody responses to Plasmodium falciparum antigens in individuals differentially exposed to Anopheles bites. Malaria Journal, BioMed Central, 2020, 19 (1), ⟨10.1186/s12936-020-03160-5⟩. ⟨hal-02991025⟩
Siyang Xia, Luciano Cosme, Joel Lutomiah, Rosemary Sang, Marc Ngangue, et al.. Genetic structure of the mosquito Aedes aegypti in local forest and domestic habitats in Gabon and Kenya. Parasites and Vectors, BioMed Central, 2020, 13 (1), ⟨10.1186/s13071-020-04278-w⟩. ⟨hal-02958593⟩
Colette Marie Gaillard, Sebastien David Pion, Hadjira Hamou, Constant Sirima, Charlotte Bizet, et al.. Detection of DNA of filariae closely related to Mansonella perstans in faecal samples from wild non-human primates from Cameroon and Gabon. Parasites & Vectors, 2020, 13 (1), ⟨10.1186/s13071-020-04184-1⟩. ⟨hal-02991285⟩
Nadine Ali, Johannes Tavoillot, Bernard Martiny, Odile Fossati- Gaschignard, Stephan Plas, et al.. Legacy of plant-parasitic nematode communities from past ecosystems and shift by recent afforestation: hierarchy of environmental drivers.. Global Ecology and Conservation, Elsevier, 2020, pp.e01423. ⟨10.1016/j.gecco.2020.e01423⟩. ⟨hal-03092223⟩
C. Diagne, B. Leroy, R. Gozlan, A.-C. Vaissière, C. Assailly, et al.. InvaCost, a public database of the economic costs of biological invasions worldwide. Scientific Data , Nature Publishing Group, 2020, 7 (1), ⟨10.1038/s41597-020-00586-z⟩. ⟨hal-03085161⟩
J. Isaïa, Ana Rivero, O. Glaizot, P. Christe, R. Pigeault. Last-come, best served? Mosquito biting order and Plasmodium transmission. Proceedings of the Royal Society B: Biological Sciences, Royal Society, The, 2020, 287 (1939), pp.20202615. ⟨10.1098/rspb.2020.2615⟩. ⟨hal-03063938⟩
Jean-Pierre Dedet. Histoire des épidémies. Les Tribunes de la santé : Sève, Presses de Science Po, 2020, Les sociétés face aux épidémies : de la peste à la Covid-19, Automne 2020 (66), pp.25-33. ⟨hal-03217954⟩
Luis Enrique Cortés-Hernández, Zahra Eslami-S, Antoine Dujon, Mathieu Giraudeau, Beata Ujvari, et al.. Do malignant cells sleep at night?. Genome Biology, BioMed Central, 2020, 21 (1), ⟨10.1186/s13059-020-02179-w⟩. ⟨hal-03025763⟩
Thomas Vial, Wei-Lian Tan, Eric Deharo, Dorothée Missé, Guillaume Marti, et al.. Mosquito metabolomics reveal that dengue virus replication requires phospholipid reconfiguration via the remodeling cycle. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2020, 117 (44), pp.27627-27636. ⟨10.1073/pnas.2015095117⟩. ⟨hal-02987663⟩
J.B. Mangombi, N. N'Dilimabaka, H. Medkour, O.L. Banga, M.L. Tall, et al.. Bartonella gabonensis sp. nov., a new bartonella species from savannah rodent Lophuromys sp. in Franceville, Gabon. New Microbes and New Infections, Wiley Online Library 2020, 38, pp.100796. ⟨10.1016/j.nmni.2020.100796⟩. ⟨hal-03086548⟩
Carmen Murall, Bastien Reyné, Christian Selinger, Claire Bernat, Vanina Boué, et al.. HPV cervical infections and serological status in vaccinated and unvaccinated women. Vaccine, Elsevier, 2020, 38 (51), pp.8167-8174. ⟨10.1016/j.vaccine.2020.10.078⟩. ⟨hal-03001077v2⟩
Justine Boutry, Antoine Dujon, Anne-Lise Gerard, Sophie Tissot, Nick Macdonald, et al.. Ecological and Evolutionary Consequences of Anticancer Adaptations. iScience, Elsevier, 2020, 23 (11), pp.101716. ⟨10.1016/j.isci.2020.101716⟩. ⟨hal-03026342⟩
Audrey Arnal, Benjamin Roche, Louis-Clément Gouagna, Antoine Dujon, Beata Ujvari, et al.. Cancer and mosquitoes – An unsuspected close connection. Science of the Total Environment, Elsevier, 2020, 743, pp.140631. ⟨10.1016/j.scitotenv.2020.140631⟩. ⟨hal-02959074⟩
Baptiste Elie, Samuel Alizon. Analyses génomiques et phylodynamiques du SARS-Cov-2. Revue Francophone des Laboratoires, Elsevier, 2020, 2020 (526), pp.57-62. ⟨10.1016/S1773-035X(20)30314-2⟩. ⟨hal-02893568v2⟩
Eva Lievens, Yannis Michalakis, Thomas Lenormand. Trait‐specific trade‐offs prevent niche expansion in two parasites. Journal of Evolutionary Biology, Wiley, 2020, ⟨10.1111/jeb.13708⟩. ⟨hal-02995355⟩
Illich Manfred Mombo, Larson Boundenga, Nicolas Berthet, Rebeca Atencia, Debby Cox, et al.. A Second Genome Sequence of an Enterovirus C99 Detected in a Healthy Chimpanzee. Microbiology Resource Announcements, American Society for Microbiology, 2020, 9 (42), ⟨10.1128/MRA.00893-20⟩. ⟨hal-03065955⟩
Rodrigo Hamede, Thomas Madsen, Hamish Mccallum, Andrew Storfer, Paul Hohenlohe, et al.. Darwin, the devil, and the management of transmissible cancers. Conservation Biology, Wiley, 2020, ⟨10.1111/cobi.13644⟩. ⟨hal-03025750⟩
Yann Gomard, Olivier Flores, Marion Vittecoq, Thomas Blanchon, Céline Toty, et al.. Changes in Bacterial Diversity, Composition and Interactions During the Development of the Seabird Tick Ornithodoros maritimus (Argasidae). Microbial Ecology, Springer Verlag, 2020, ⟨10.1007/s00248-020-01611-9⟩. ⟨hal-02961633⟩
Serge Mazamay, Hélène Broutin, Didier Bompangue, Jean-Jacques Muyembe, Jean-François Guégan. The environmental drivers of bacterial meningitis epidemics in the Democratic Republic of Congo, central Africa. PLoS Neglected Tropical Diseases, Public Library of Science, 2020, 14 (10), ⟨10.1371/journal.pntd.0008634⟩. ⟨hal-03014262⟩
Chris Clarkson, Alistair Miles, Nicholas Harding, Eric Lucas, C Battey, et al.. Genome variation and population structure among 1,142 mosquitoes of the African malaria vector species Anopheles gambiae and Anopheles coluzzii. Genome Research, Cold Spring Harbor Laboratory Press, 2020, ⟨10.1101/gr.262790.120⟩. ⟨hal-02446284⟩
Bénédicte Fustec, Thipruethai Phanitchat, Mohammad Injamul Hoq, Sirinart Aromseree, Chamsai Pientong, et al.. Complex relationships between Aedes vectors, socio-economics and dengue transmission—Lessons learned from a case-control study in northeastern Thailand. PLoS Neglected Tropical Diseases, Public Library of Science, 2020, 14 (10), pp.e0008703. ⟨10.1371/journal.pntd.0008703⟩. ⟨hal-02991118⟩
Thomas Otto, Aude Gilabert, Thomas Crellen, Ulrike Böhme, Céline Arnathau, et al.. Author Correction: Genomes of all known members of a Plasmodium subgenus reveal paths to virulent human malaria. Nature Microbiology, Nature Publishing Group, 2020, 5 (10), pp.1306-1306. ⟨10.1038/s41564-020-0787-9⟩. ⟨hal-03065949⟩
Prince Nyarko, Antoine Claessens. Understanding Host–Pathogen–Vector Interactions with Chronic Asymptomatic Malaria Infections. Trends in Parasitology, Elsevier, 2020, ⟨10.1016/j.pt.2020.09.017⟩. ⟨hal-02981651⟩
Anais Bompard, Dari Da, Serge Yerbanga, Isabelle Morlais, Parfait Awono-Ambéné, et al.. High Plasmodium infection intensity in naturally infected malaria vectors in Africa. International Journal for Parasitology, Elsevier, 2020, 50, pp.985 - 996. ⟨10.1016/j.ijpara.2020.05.012⟩. ⟨hal-02992995⟩
Florent Rumiano, Elodie Wielgus, Eve Miguel, Simon Chamaillé-Jammes, Hugo Valls-Fox, et al.. Remote Sensing of Environmental Drivers Influencing the Movement Ecology of Sympatric Wild and Domestic Ungulates in Semi-Arid Savannas, a Review. Remote Sensing, MDPI, 2020, 12 (19), pp.33-53. ⟨10.3390/rs12193218⟩. ⟨hal-02980590⟩
Jean‐pascal Capp, Frédéric Thomas. Tissue‐disruption‐induced cellular stochasticity and epigenetic drift: Common origins of aging and cancer?. BioEssays, Wiley-VCH Verlag, 2020, ⟨10.1002/bies.202000140⟩. ⟨hal-03000870⟩
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Elsa Léger, Xiangye Liu, Sébastien Masséglia, Valérie Noël, Gwenaël Vourc’h, et al.. Reliability of molecular host-identification methods for ticks: an experimental in vitro study with Ixodes ricinus. Parasites and Vectors, BioMed Central, 2015, 8 (1), pp.433. ⟨10.1186/s13071-015-1043-7⟩. ⟨hal-02004408⟩
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Pauline Ezanno, Melaine Aubry-Kientz, Sandie Arnoux, Priscilla Cailly, Grégory l'Ambert, et al.. A generic weather-driven model to predict mosquito population dynamics applied to species of Anopheles, Culex and Aedes genera of southern France.. Preventive Veterinary Medicine, Elsevier, 2015, 120 (1), pp.39-50. ⟨10.1016/j.prevetmed.2014.12.018⟩. ⟨hal-02636104⟩
Bernard Taverne, Akindès Francis, Abderamane Berthe, Blandine Bila, Caremel Jean-François, et al.. Anticiper les flambées épidémiques à virus Ebola : pas sans les sciences sociales !. Global Health Promotion, SAGE Publications, 2015, 22 (2), pp.85-86. ⟨10.1177/1757975915582299⟩. ⟨ird-01521523⟩
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Gael Maganga, Mathieu Bourgarel, Judicael Obame Nkoghe, Nadine N'Dilimabaka, Christian Drosten, et al.. Identification of an Unclassified Paramyxovirus in Coleura afra: A Potential Case of Host Specificity. PLoS ONE, Public Library of Science, 2014, 9 (12), pp.e115588. ⟨10.1371/journal.pone.0115588⟩. ⟨hal-03002439⟩
Denis Filisetti, Yvon Sterkers, Marie-Pierre Brenier-Pinchart, Sophie Cassaing, Frédéric Dalle, et al.. Multicentric Comparative Assessment of the Bio-Evolution Toxoplasma gondii Detection Kit with Eight Laboratory-Developed PCR Assays for Molecular Diagnosis of Congenital Toxoplasmosis. Journal of Clinical Microbiology, American Society for Microbiology, 2014, 53 (1), pp.29-34. ⟨10.1128/jcm.01913-14⟩. ⟨hal-02191310⟩
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C. Brengues, J.B. Ferré, Gilbert Le Goff, P. Lami, F. Pratlong, et al.. A multiplex PCR to differentiate the two sibling species of mosquitoes Ochlerotatus detritus and Oc. coluzzii and evidence for further genetic heterogeneity within the Detritus complex. Infection, Genetics and Evolution, Elsevier, 2014, 28, pp.676-680. ⟨10.1016/j.meegid.2014.07.010⟩. ⟨hal-03094491⟩
Alexandra Marie, Philippe Holzmuller, Majoline T. Tchioffo, Marie Rossignol, Edith Demettre, et al.. Anopheles gambiae salivary protein expression modulated by wild Plasmodium falciparum infection : highlighting of new antigenic peptides as candidates of An. gambiae bites. Parasites and Vectors, BioMed Central, 2014, 7, pp.599. ⟨10.1186/s13071-014-0599-y⟩. ⟨hal-01942941⟩
Nil Rahola, Boris Makanga, Patrick Yangari, Davy Jiolle, Didier Fontenille, et al.. Description of Anopheles gabonensis, a new species potentially involved in rodent malaria transmission in Gabon, Central Africa. Infection, Genetics and Evolution, Elsevier, 2014, 28, pp.628-634. ⟨10.1016/j.meegid.2014.05.012⟩. ⟨hal-02065032⟩
Amélie Vantaux, Kounbobr Roch Dabiré, Anna Cohuet, Thierry Lefèvre. A heavy legacy: offspring of malaria-infected mosquitoes show reduced disease resistance. Malaria Journal, BioMed Central, 2014, 13 (1), ⟨10.1186/1475-2875-13-442⟩. ⟨hal-02411103⟩
Benoît Assogba, Luc Djogbénou, Jacques Saizonou, Pascal Milesi, Laurette Djossou, et al.. Phenotypic effects of concomitant insensitive acetylcholinesterase (ace-1 R ) and knockdown resistance (kdr R ) in Anopheles gambiae: a hindrance for insecticide resistance management for malaria vector control. Parasites and Vectors, BioMed Central, 2014, 7 (1), pp.548. ⟨10.1186/s13071-014-0548-9⟩. ⟨hal-01944547⟩
Kevin Carolan, Andres Garchitorena, Gabriel E. García-Peña, Aaron Morris, Jordi Landier, et al.. Topography and Land Cover of Watersheds Predicts the Distribution of the Environmental Pathogen Mycobacterium ulcerans in Aquatic Insects. PLoS Neglected Tropical Diseases, Public Library of Science, 2014, 8 (11), pp.e3298. ⟨10.1371/journal.pntd.0003298⟩. ⟨hal-01342938⟩
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Michela Menegon, Durand Patrick, Didier Menard, Eric Legrand, Stéphane Picot, et al.. Genetic diversity and population structure of Plasmodium vivax isolates from Sudan, Madagascar, French Guiana and Armenia.. Infection, Genetics and Evolution, Elsevier, 2014, 27, pp.244-9. ⟨10.1016/j.meegid.2014.07.029⟩. ⟨pasteur-01109682⟩
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Communications dans un congrès38 documents

Charlotte Brives, Rémy Froissart. Dealing with Bacteriophage Evolvability in the Development of Phage Therapy. 5eme Conferences Jacques Monod : Évolution virale sur le continuum mutualiste - parasite, Jacques Monod Conferences, Oct 2019, Roscoff, France. ⟨halshs-02486675⟩
Stéphane Blanc, Romain Gallet, Jérémy Di Mattia, Sébastien Ravel, Renaud Vitalis, et al.. Gene copy number variation impacts on gene expression in a multipartite virus. 10. Workshop in Virus Evolution, Mar 2019, Pennsylvania, United States. ⟨hal-02786127⟩
Stéphane Blanc, Michel Yvon, Yannis Michalakis. A plant virus drastically increases the mobility and survival of starving aphid vectors. 2018 ESA, ESC, and ESBC Joint Annual Meeting (Entomology 2018), Entomological Society of America (ESA). USA., Nov 2018, Vancouver, Canada. ⟨hal-02785252⟩
Thierry Baldet, Fabrice Chandre, Isabelle Deme, Magali Eychenne, Katia Grucker, et al.. Vectopole Sud, a french network of platforms for research in medical, veterinary and agricultural entomology. 21. European Society for Vector Ecology Conference (E-SOVE), Oct 2018, Palermo, Italy. ⟨hal-02154686⟩
Marc Souchaud, Pierre Jacob, Camille Simon, Aymeric Histace, Olivier Romain, et al.. Mobile Phones Hematophagous Diptera Surveillance in the field using Deep Learning and Wing Interference Patterns. Proceedings of 26th IEEE International Conference on Very Large Scale Integration, Oct 2018, Verona, Italy. ⟨hal-01911617⟩
Stéphane Blanc, Elodie Pirolles, Romain Gallet, Anne Sicard, Jérémy Di Mattia, et al.. A mulicellular lifestyle for a multipartite virus. 14. Congrès national de la Société Française de Microbiologie (SFM), Société Française de Microbiologie (SFM). FRA. American Sorciety for Microbiology (ASM), USA., Oct 2018, Paris, France. ⟨hal-02733737⟩
Françoise Le Mort, Bérénice Chamel, Dana Guiserix, Emmanuelle Albalat, Theo Tacail, et al.. Identifying anaemias in prehistoric Cyprus: An innovative approach at the crossroads of classic and new methods. Overcoming past preservation issues. Current research in bioarchaeology in Cyprus, Sep 2018, Vienne, Austria. ⟨halshs-02005138⟩
Thierry Valéro, Bruno Granouillac. REDCap : Du terrain à la conformité, de la recherche clinique à l'écologie ?. Atelier « Carnets de terrain électroniques », au CEFE, Avec avec le soutien de l’OSU OREME, de la Zone Atelier Antarctique et Subantarctique (ZATA), des Plateformes SIE et PLT du CEFE (Montpellier) et du Labex CeMEB (Montpellier)., Mar 2018, Montpellier, France. ⟨hal-02336991⟩
Suzanne Bastian, Albert Agoulon, Xavier Bailly, Alain Butet, Amélie Chastagner, et al.. Why such a contrast between the low prevalence of zoonotic pathogens in questing ticks and the high prevalence in their vertebrate reservoir hosts?. Pathobiome 2018, Mar 2018, Ajaccio, France. 55 p. ⟨hal-02737137⟩
Amélie Chastagner, Angélique Pion, Hélène Verheyden, Bruno Lourtet, Bruno Cargnelutti, et al.. Influence de la spécificité d’hôte, de l’expositon et des modalités de sur-infection sur la distribution des génotypes d’Anaplasma phagocytophilum dans les tiques et les chevreuils d’un paysage fragmenté. Réunion du groupe « Tiques et Maladies à Tiques » (TMT), Mar 2018, Laschamps - Saint Genes Champanelle, France. ⟨hal-02737908⟩
Stéphane Blanc, Romain Gallet, Anne Sicard, Jérémy Di Mattia, Yannis Michalakis. The lifestyle of a multipartite virus challenges major paradigms in Virology. Conférence Jacques Monod «questions ouvertes sur l’écologie et l’évolution des maladies infectieuses : de la recherche fondamentale à la médecine évolutive», Institut Jacques Monod. FRA., Oct 2017, Roscoff, France. ⟨hal-02785430⟩
Olivier Plantard, Albert Agoulon, Suzanne Bastian, Thierry Hoch, Elsa Quillery, et al.. Taking into account the spatial heterogeneity of agricultural landscapes to explain densities and movements of Ixodes ricinus and prevalence of its associated pathogens. 9. Tick and Tick-borne Pathogen Conference & 1st Asia Pacific Rickettsia Conference, Aug 2017, Cairns, Australia. 140 p. ⟨hal-02737044⟩
Stéphane Blanc, Michel Yvon, Yannis Michalakis. A plant virus increases mobility and survival of its starving aphid vectors. Virus Evolution Workshop Virus, Mar 2017, State College, PA, United States. ⟨hal-02785433⟩
Anaïs Bompard, Dari F. Da, Serge Yerbanga, Thierry Lefèvre, Thomas S. Churcher, et al.. High Plasmodium falciparum oocyst loads in naturally infected mosquitoes in Africa. 62. Annual Meeting of the American Society of Tropical medicine and Hygiene (ASTMH), 2017, Baltimore, United States. ⟨hal-02737095⟩
Anne Sicard, Yannis Michalakis, Jean Louis Zeddam, Michel Yvon, Michel Peterschmitt, et al.. A pluricellular way of life for nanoviruses. 8. International Geminivirus Symposium, Nov 2016, New-Delhi, India. 1 p. ⟨hal-01603572⟩
Nguyen Hoang Pham, Jean Daniel Zucker, Marc Choisy, Ho Tuong Vinh. Causality Analysis Between Climatic Factors And Dengue Fever Using The Granger Causality. 12th IEEE RIVF Conference on Computing and Communication Technologies (RIVF 2016), Nov 2016, Ha Noi, Vietnam. ⟨10.1109/RIVF.2016.7800268⟩. ⟨hal-01548254⟩
Marc Choisy, Alexis Drogoul, Benoit Gaudou, Nicolas Marilleau, Damien Philippon, et al.. Epidemiological Risks and Integration of Health Policies on a Regional Scale: Modelling to Make Better Decisions. 10ème édition des Journées de Tam Dao 2016 : Les enjeux de la transition énergétique au Vietnam et en Asie du Sud-Est (JTD 2016), Viet Nam Academy of Social Sciences (VASS); École française d'Extrême-Orient (ÉFEO); Agence Française de Développement (AFD),; Institut de Recherche pour le Développement (IRD); Agence universitaire de la Francophonie (AUF); Nantes University (France); Centre de coopération internationale en recherche agronomique pour le développement (CIRAD), Jul 2016, Danang, Vietnam. pp.167--207. ⟨hal-03159064⟩
Stéphane Blanc, Anne Sicard, Yannis Michalakis, Jean Louis Zeddam, Michel Yvon, et al.. A pluricellular way of life for multipartite viruses. Institut Pasteur & Institut Curie Post-doc and PhD retreat, Jun 2016, Branville, France. ⟨hal-02794780⟩
Michel Yvon, Yannis Michalakis, Stéphane Blanc. Transmitted plant viruses can affect performances of starving aphid vectors. 13. International plant virus epidemiology symposium, Jun 2016, Avignon, France. 165 p. ⟨hal-02740622⟩
Benoit Moury, Frédéric Fabre, Eugénie Hébrard, Rémy Froissart. Determinants of host species range in plant viruses. 13. International plant virus epidemiology symposium, Jun 2016, Avignon, France. 165 p. ⟨hal-02738870⟩
Damien Philippon, Marc Choisy, Alexis Drogoul, Benoit Gaudou, Nicolas Marilleau, et al.. Exploring Trade and Health Policies Influence on Dengue Spread with an Agent-Based Model. 17th International Workshop on Multi-Agent-Based Simulation, MABs 2016, May 2016, Singapour, Singapore. ⟨10.1007/978-3-319-67477-3_6⟩. ⟨hal-02733681⟩
Olivier Plantard, David Abrial, Albert Agoulon, Xavier Bailly, Suzanne Bastian, et al.. Le projet Oscar : prendre en compte l'hétérogénéité spatiale du paysage pour comprendre les déterminants de la distribution du risque lié aux maladies à tiques. 13. Journées d'Animation Scientifique du Département de Santé Animale (JAS), May 2016, Poitiers, France. ⟨hal-02800337⟩
Damien Philippon, Marc Choisy, Alexis Drogoul, Benoit Gaudou, Nicolas Marilleau, et al.. Exploring trade and health policies influence on Dengue spread with an Agent-Based Model. 17th International Workshop on Multi-Agent-Based Simulation (MABS 2016) at AAMAS 2016, May 2016, Singapore, Singapore. pp. 111-127. ⟨hal-01690134⟩
Oussama Baker, Eric Coqueugniot, Bérénice Chamel, Françoise Le Mort, Pascale Perrin, et al.. La tuberculose humaine, anthropozoonose néolithique ou infection d’homininés du Pléistocène inférieur ?. 141e Congrès du Comité des Travaux Historiques et Scientifiques : L’animal et l’Homme, Apr 2016, Rouen, France. ⟨hal-01819249⟩
Oussama Baker, Eric Coqueugniot, Bérénice Chamel, Françoise Le Mort, Pascale Perrin, et al.. Au moins 10 000 ans ! Preuves pluridisciplinaires de l’ancienneté de la tuberculose humaine au Levant. Colloque annuel de la Société d’Anthropologie de Paris, Jan 2016, lyon, France. ⟨hal-01819280⟩
Michel Yvon, Yannis Michalakis, Stéphane Blanc. A plant virus is a long life potion for aphid vectors. 8. Rencontres du réseau Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2015, Paris, France. ⟨hal-02794215⟩
Kévin Hidalgo, David Siaussat, Karine Mouline, Frédéric Simard, David Renault. Plasticité éco-physiologique des femelles moustiques Anopheles gambiae et A. coluzzii exprimée en réponse aux conditions déshydratantes de la saison sèche en Afrique de l’Ouest.. 2ème Colloque d'EcoPhysiologie Animale – CEPA2, Sep 2015, La Rochelle, France. ⟨hal-02489765⟩
Kévin Hidalgo, David Siaussat, Karine Mouline, Frédéric Simard, David Renault. Comparative physiological plasticity to desiccation among distinct populations of the malarial mosquito, Anopheles coluzzii. 6th International Symposium of Environmental Physiology of Ectotherms and Plants (ISEPEP6), Aug 2015, Aarhus, Denmark. ⟨hal-02489754⟩
Stéphane Blanc, Anne Sicard, Jean Louis Zeddam, Michel Yvon, Serafin Gutierrez, et al.. New concepts in the biology of multipartite viruses. 13. National Congress of Virology, Jun 2015, Madrid, Spain. ⟨hal-02794778⟩
Magali Cruel, Morad Bensidhoum, Pierre Becquart, Cécile Nouguier-Lehon, Hervé Petite, et al.. Etude numérique de l'environnement micromécanique des cellules souches mésenchymateuses dans un bioréacteur d'ingénierie tissulaire osseuse. 12e Colloque national en calcul des structures, CSMA, May 2015, Giens, France. ⟨hal-01517274⟩
Amélie Chastagner, Gwenaël Vourc’h, T. Dugat, Hélène Verheyden, Laurent Legrand, et al.. Les caractéristiques d'un paysage agricole influencent-elles la relation rongeur-tique ?. Réunion annuel du groupe "Tiques et Maladies à Tiques" (TMT) du Réseau Ecologie des Interactions Durables (REID), Mar 2015, Montferrier sur Lez, France. ⟨hal-02417303⟩
Stéphane Blanc, Anne Sicard, Jean Louis Zeddam, Michel Yvon, Serafin Gutierrez, et al.. The strange biology of multipartite viruses. Virus Evolution Workshop, Mar 2015, State College, United States. ⟨hal-02794244⟩
Olivier Plantard, Albert Agoulon, Suzanne Bastian, Laurence Malandrin, Thierry Hoch, et al.. A mapping tool to evaluate the impact of global change on tick-borne disease risk in European agricultural landscapes. 3e Conférence « Global Climate Smart Agriculture », Mar 2015, Montpellier, France. ⟨hal-01169433⟩
Benoit Moury, Eugénie Hébrard, Rémy Froissart. Determinants of host species range in plant viruses. 15. Rencontres de Virologie Végétale (RVV), Jan 2015, Aussois, France. pp.1. ⟨hal-02739696⟩
Stéphanie Jacquet, Karine Huber, Jérémy Bouyer, Christine Chevillon, Thomas Balenghien, et al.. Phylogeography of Culidoides imicola (Diptera Ceratopogonidae), biting midge vector species of Orbivirus: expansion and colonization?. E-SOVE 2014. 19, Oct 2014, Thessalonique, Greece. 31 p. ⟨hal-02797149⟩
Anne Sicard, Serafin Gutierrez-Simon, Michel Yvon, Yannis Michalakis, Stéphane Blanc. Gene copy number variations during the life cycle of a multipartite virus. Conférences Jacques Monod: « From emerging to pandemic viruses: Interplay between host ecology and viral evolution », Apr 2014, Roscoff, France. ⟨hal-02794394⟩
Pauline Ezanno, Priscilla Cailly, Thomas Balenghien, Mélaine Aubry-Kientz, Grégory l'Ambert, et al.. A generic climate-driven model to evaluate control strategies of mosquito populations in temperate wetlands. 18. International Conference European Society for Vector Ecology (E-sove), European Society for Vector Ecology (E-SOVE). Corona, USA., Oct 2012, Montpellier, France. 270 p. ⟨hal-02749488⟩
Gilbert Le Goff, Nil Rahola, Betty Zumbo, Vincent Robert. Inventory of mosquitoes in Mayotte, French Departement in the Indian Ocean. Towards a multi-scale approach for improving pest management. Sampling methods, Remote Sensing and GIS: applications to insect ecology and management, Oct 2011, Montpellier, France. ⟨cirad-00645858⟩

Posters14 documents

Guotian Luo, Joseph Paquet, Julie Boisselier, Adeline Gand, Adrien Moya, et al.. Enzyme-controlled, Nutritive Hydrogel For Mesenchymal Stem Cell Survival And Paracrine Functions. Orthopaedic Research Society, Feb 2020, Phenix, United States. ⟨hal-02365029⟩
Anais Goulas, Drifa Belhadi, Alexandre Descamps, Antoine Andremont, Pierre Benoit, et al.. Solutions to control the dissemination of antibiotic resistance in the environment: systematic review including a meta-analysis. IXe colloque de l’Association Francophone d’Ecologie Microbienne, Nov 2019, Bussang, France. ⟨hal-02938201⟩
F. Rumiano, E. Wielgus, Eve Miguel, M. de Garine-Wichatitsky, A. Tran, et al.. Remote sensing and the mobility of buffalo and cattle in Southern Africa : a review of the key environmental factors and their characterization from Earth observation satellite imagery [poster]. Gordon Research Conference.Movement Ecology of Animals.Animal Movement as a Link Between Ecology, Evolution and Behavior, Mar 2019, Barga, Italy. 1 p. multigr., 2019. ⟨hal-02915598⟩
Karine Huber, Stéphanie Jacquet, Ronan Rivallan, Hassane Adakal, Nathalie Vachiery, et al.. Low effective population sizes in Amblyomma variegatum in West Africa: implication for the sustainability of acaricide-based control programs. 21. European Society for Vector Ecology Conference (E-SOVE), Oct 2018, Palerme, Italy. 2018. ⟨hal-02785255⟩
Suzanne Bastian, Albert Agoulon, Xavier Bailly, Alain Butet, Amélie Chastagner, et al.. Why such a contrast between the low prevalence of zoonotic pathogens in questing ticks and the high prevalence in their verterbrate reservoir hosts?. Pathobiome 2018 “Pathogens in microbiota in hosts”, Mar 2018, Ajaccio, France. ⟨hal-02418162⟩
Alexis Drogoul, Marc Choisy, Benoit Gaudou, Nicolas Marilleau, Damien Philippon. Large-scale epidemiological modeling: exploring the impact of ASEAN « economic corridors policy » on the spread and management of Dengue fever epidemics (poster). Conference ICT/BIO ASIA 2016 Regional Workshop, May 2016, Kuala Lumpur, Malaysia. 2016. ⟨hal-03159065⟩
Elsa Jourdain, Séverine Barry, - González-Acuña, D., Olivier Duron, Karim Sidi-Boumedine. Do genetic markers routinely used to detect Coxiella burnetii in ticks cross-react with Coxiella-like bacteria?. 25. International Congress on Rickettsia and other Intracellular Bacteria, Jun 2015, Lausanne, Switzerland. 2015. ⟨hal-02796199⟩
Amélie Chastagnier, Gwenaël Vourc’h, T. Dugat, Hélène Verheyden, Laurent Legrand, et al.. Several Anaplasma phagocytophilum epidemiological cycles in France revealed by sequencing. Conference GERI Genes, Ecosystems and Risk of Infection, Apr 2015, Heraklion, Greece. 2015. ⟨hal-01169445⟩
Oussama Baker, Oona Y.-C. Lee, Hui-Yin Wu, Gurdyal S Besra, D.E. Minnikin, et al.. New evidence for an early presence of human tuberculosis in the Fertile Crescent more than 10 milleniums ago, predating domestication period. Biomedical Science and Methods in Archaeology, Nov 2014, bordeaux, France. ⟨hal-01819304⟩
Gilbert Le Goff, Cyrille Lebon, Frédéric Jean, Sébastien Boyer, Louis-Clément Gouagna. Technique de l'insecte stérile à la Réunion : comprendre le fonctionnement de la cible : Aedes albopictus [poster]. 23ème Fête de la Science, Nov 2014, Sainte Clotilde, Réunion. IRD, 1 p. ⟨ird-01471305⟩
Mathieu Moslonka-Lefebvre, Sebastian Bonhoeffer, Samuel Alizon. Weighting for sex acts to understand the spread of STI on networks. Epidemics on Networks: Current Trends and Challenges, Sep 2012, Girona, Spain. 2012. ⟨hal-02808993⟩
Serafin Gutierrez, Michel Yvon, Y. Michalakis, Stéphane Blanc. Population bottlenecks during the colonisation of different host species by different plant viruses with overlapping host ranges. International Advances in Plant Virology, Joint meeting of the Dutch Circle of Plant Virologist and ABB-Plant Virology, Sep 2010, Warwick, United Kingdom. 2010. ⟨hal-02813603⟩
Guy Lempérière, R. Jason Pitts, P Howells, Anna Karine Borg-Karison, Anne Gauvin-Bialecki, et al.. Chemical ecology of mosquitoes : A review of multitrophic interactions in Culicidae.. 26th Annual Meeting of International Society of Chemical Ecology, Jul 2010, Tours, France. ⟨hal-01244025⟩
Marc Choisy, Nathalie Peyrard, Regis Sabbadin. A probabilistic decision framework to optimize the dynamics of a network evolution: application to the control of childhood diseases. ECCS'07 European Conference on Complex Systems, Oct 2007, Dresden, Germany. 2007. ⟨hal-02753638⟩

Ouvrages (y compris édition critique et traduction)16 documents

Samuel Alizon. Évolution, écologie et pandémies : Faire dialoguer Pasteur et Darwin. Points Sciences, 2020, 2757887238. ⟨hal-03045497⟩
Said Mohamed Ali, Fiona Allan, Irène Ayi, Fabrice Chandre, Paulo Marcos Zech Coelho, et al.. Utilisation sur le terrain de molluscicides dans les programmes de lutte contre la schistosomiase : un manuel pratique à l’usage des gestionnaires de programmes. WHO. 2020, 978-92-4-000045-2. ⟨hal-03001037⟩
I. Ayi, Fabrice Chandre, M.J. Chimbari, P.M.Z. Coelho, M.A. El-Emam, et al.. Lignes directrices pour les essais en laboratoire et sur le terrain de molluscicides destinés à la lutte contre la schistosomiase. WHO/Department of control of neglected tropical diseases, A paraître, 978-92-4-000046-9. ⟨hal-03001009⟩
I. Ayi, Fabrice Chandre, P.M.Z. Coelho, A.K. El-Harawy, M.A. Elemam, et al.. Guidelines for laboratory and field testing of molluscicides for control of schistosomiasis. Rajpal Singh Yadav. World Health Organization, 2019, 978 92 4 151540 5. ⟨hal-02378870⟩
M. (ed.) Broin, E. (ed.) Delaporte, M. (ed.) Duru, J. (ed.) Izopet, M. (ed.) Paul, et al.. Santé globale : homme, animal, plantes, environnement : pour des approches intégrées de la santé. Agropolis International, 48 p., 2019, Dossiers d'Agropolis International. ⟨hal-02883632⟩
M. (ed.) Broin, E. (ed.) Delaporte, M. (ed.) Duru, J. (ed.) Izopet, M. (ed.) Paul, et al.. Global health : people, animals, plants, the environment : towards an integrated approach to health. Agropolis International, 48 p., 2019, Dossiers d'Agropolis International. ⟨hal-02883654⟩
Michel (ed.) Tibayrenc, F.J. (ed.) Ayala. On human nature : biology, psychology, ethics, politics, and religion. Elsevier, 814 p., 2017, 978-0-12-420190-3. ⟨10.1016/C2013-0-12950-9⟩. ⟨hal-02446904⟩
G. Duvallet, Didier Fontenille, Vincent Robert. Entomologie médicale et vétérinaire. IRD; Quae, 688 p.-688 p., 2017. ⟨hal-03054125⟩
Said Mohamed Ali, Fiona Allan, Irène Ayi, Fabrice Chandre, Paulo Marcos Zech Coelho, et al.. Field use of molluscicides in schistosomiasis control programmes: an operational manual for programmemanagers.. WHO. 2017, 978-92-4-151199-5. ⟨hal-02379480⟩
Christophe Paupy, Stéphane Blanc, G. Boëtsch, M. Hossaert-Mckey, F. Renaud, et al.. Ecologie de la santé : pour une nouvelle lecture de nos maux. Le Cherche Midi; CNRS, 191 p.-191 p., 2017. ⟨hal-03002597⟩
Samuel Alizon. C'est grave Dr Darwin ? L'évolution, les microbes et nous. Le Seuil, 2016, 2021102920. ⟨hal-01638066⟩
Swanni Tatiana Alvarado, Christopher Baraloto, Laurent Bremond, François Bretagnolle, Elise Buisson, et al.. Écologie tropicale : de l'ombre à la lumière.. P.-M. Forget, M. Hossaert-McKey & O. Poncy. Le Cherche midi; CNRS, pp.192, 2015, 978-2-7491-4075-9. ⟨hal-01118878⟩
Serge Janicot, Catherine Aubertin, Martial Bernoux, Edmond Dounias, Jean-François Guégan, et al.. Changement climatique. Quels défis pour le Sud?. Institut de Recherche pour le Développement, pp.270, 2015. ⟨hal-01473086⟩
Magali Reinert, Serge Janicot, Catherine Aubertin, Martial Bernoux, Edmond Dounias, et al.. Climate change : what challenges for the South ?. IRD, 272 p., 2015, 978-2-7099-2172-5. ⟨hal-01848329⟩
Magali Reinert, Serge Janicot, Catherine Aubertin, Martial Bernoux, Edmond Dounias, et al.. Changement climatique : quels défis pour le Sud ?. IRD, 2015, 978-2-7099-2168-8. ⟨hal-01848330⟩
Thierry Lefèvre, Anna Cohuet, Ana Rivero. Manipulation parasitaire et maladies vectorielles (In: Santé, médecine et sciences de l'évolution - Les maladies infectieuses). DeBoeck, 2015. ⟨hal-02364062⟩

Chapitres d'ouvrage46 documents

Samuel Alizon. Phylogénies d'infections et phylodynamique. Étude de l’évolution par l’approche mathématique et informatique, A paraître. ⟨hal-02884408⟩
Anette Hernández-Andrade, Joel Moo-Millan, Nohemi Cigarroa-Toledo, Angel Ramos-Ligonio, Claudia Herrera, et al.. Metabarcoding: A Powerful Yet Still Underestimated Approach for the Comprehensive Study of Vector-Borne Pathogen Transmission Cycles and Their Dynamics. Vector-Borne Diseases - Recent Developments in Epidemiology and Control, IntechOpen, 2020, ⟨10.5772/intechopen.89839⟩. ⟨hal-02958374⟩
Tuul Sepp, Kevin J. Mcgraw, Mathieu Giraudeau. Urban evolutionary physiology. Marta Szulkin; Jason Munshi-South; Anne Charmantier. Urban sexual selection, Oxford University Press, 2020, 0198836856. ⟨hal-02469017⟩
Alexandra Marie, Papa Makhtar Drame, Anne Poinsignon, Herbert Noukpo, Souleymane Doucouré, et al.. Immunoepidemiology for the Evaluation of Exposure to Malaria Vectors. Encyclopedia of Malaria, Springer New York, 2020, ⟨10.1007/978-1-4614-8757-9⟩. ⟨hal-02991322⟩
Marie-Lise Sabrié, Thomas Mourier, Corinne Lavagne, V. Thivent, Isabelle Guérin, et al.. Cartographier les ressources pour gérer les priorités. Science et développement durable : 75 ans de recherche au Sud, IRD, 2019, 978-2-7099-2737-6. ⟨ird-02272452⟩
Elodie Gazanion, Baptiste Vergnes. Protozoan Parasite Auxotrophies and Metabolic Dependencies. Experientia Supplementum, pp.351-375, 2018, ⟨10.1007/978-3-319-74932-7_9⟩. ⟨hal-02872225⟩
I. Mesquita, Baptiste Vergnes. Alterations on cellular redox states upon infection and implications for host cell homeostasis. Silvestre, R. (ed.); Torrado, E. (ed.). Metabolic interaction in Infection, Springer, p. 197-220, 2018, Experientia Supplementum, 978-3-319-74932-7. ⟨10.1007/978-3-319-74932-7_4⟩. ⟨hal-02877088⟩
Eve Miguel, Florence Fournet, Rakiswendé Serge Yerbanga, Nicolas Moiroux, Franck Yao, et al.. Optimizing public health strategies in low-income countries : epidemiology, ecology and evolution for the control of malaria. Ecology and evolution of infectious diseases : pathogen control and public health management in low-income countries., 2018, ⟨10.1093/oso/9780198789833.003.0016⟩. ⟨hal-02968232⟩
Daleb Abdoulaye Alfa, Flore Gbofan, Roch Mongbo, Marc Egrot. Filets imprégnés d’insecticides utilisés dans l’activité de maraîchage au Bénin : une innovation de santé par dérivation et par procuration. Claudie Haxaire, Baptiste Moutaud et Cyril Farnarier, L’innovation en santé. Technologies, organisations, changements, Presses Universitaires de Rennes, Collection le Sens social, Rennes, 2018. ⟨hal-02064493⟩
Carine Baxerres, Marc Egrot, Sylvie Duquenois, Emmanuel N’koué Sambiéni, Jean-Yves Le Hesran. La biomédicalisation de la grossesse au Bénin s'accompagne-t-elle d'un processus de marchandisation ?. Claudie Haxaire; Baptiste Moutaud; Cyril Farnarier. L’innovation en santé : technologies, organisations, changements, Presses universitaires de Rennes, pp.171-188, 2018, Le Sens social, 978-2-7535-6633-0. ⟨hal-01932734⟩
Marc Egrot, Carine Baxerres, Roch Houngnihin. Quand les moustiquaires poussent l’anthropologie à repenser l’innovation et l’acceptabilité dans le champ de la santé. Claudie Haxaire; Baptiste Moutaud; Cyril Farnarier. L’innovation en santé. Technologies, organisations, changements, Presse Universitaires de Rennes, pp.23-40, 2018, Le Sens social. ⟨hal-02064490⟩
S. Landry Faye, T. Ndoye, Alice Desclaux, Fred Eboko, Marc Egrot, et al.. Epidémies en Afrique de l’Ouest et du centre. Vidal, Laurent (coord.). Renforcement de la recherche en sciences sociales en appui des priorités régionales du bureau Régional Afrique de l'Ouest et du centre de l'Unicef : analyses thématiques, IRD; Unicef, p. 60-86, 2017. ⟨hal-03124074⟩
Michel Tibayrenc. Human population variability and its adaptive significance. Tibayrenc, Michel (ed.); Ayala, F.J. (ed.). On human nature : biology, psychology, ethics, politics, and religion, Elsevier, p. 85-109, 2017, 978-0-12-420190-3. ⟨10.1016/B978-0-12-420190-3.00006-5⟩. ⟨hal-02446881⟩
Michel Tibayrenc. Human intergroup variation and disease genetics. Tibayrenc, Michel (ed.); Ayala, F.J. (ed.). On human nature : biology, psychology, ethics, politics, and religion, Elsevier, p. 161-175, 2017, 978-0-12-420190-3. ⟨10.1016/B978-0-12-420190-3.00010-7⟩. ⟨hal-02446886⟩
Michel Tibayrenc. The race/ethnic debate: an outsider's view. Tibayrenc, Michel (ed.); Ayala, F. J. (ed.). On human nature : biology, psychology, ethics, politics, and religion, Elsevier, p. 633-649, 2017, 978-0-12-420190-3. ⟨10.1016/B978-0-12-420190-3.00037-5⟩. ⟨hal-02446896⟩
Laurent Amsellem, C. Brouat, Olivier Duron, S. S. Porter, A. Vilcinskas, et al.. Importance of Microorganisms to Macroorganisms Invasions: Is the Essential Invisible to the Eye? (The Little Prince, A. de Saint-Exupéry, 1943). Networks of Invasion: Empirical Evidence and Case Studies, 57, Academic Press, 297 p., 2017, Advances In Ecological Research, ⟨10.1016/bs.aecr.2016.10.005⟩. ⟨hal-02791666⟩
Samuel Alizon, F. Angelier, Guillaume Bécard, Laurent Bezin, F Courchamp, et al.. L’être vivant dans son environnement. CNRS Editions. Etonnant vivant. Découvertes et promesses du XXIème siècle (Livre blanc)., 2017. ⟨hal-01923240⟩
C. L. Murall, J. L. Abbate, M. Puelma Touzel, E. Allen-Vercoe, Samuel Alizon, et al.. Invasions of Host-Associated Microbiome Networks. Research, BT - Advances in Ecological. Networks of Invasion: Empirical Evidence and Case Studies, 57, Academic Press, 2017, Advances in Ecological Research, ⟨10.1016/bs.aecr.2016.11.002⟩. ⟨hal-01567903⟩
Andre Sagna, Anne Poinsignon, Franck Remoue. Epidemiological Applications of Assessing Mosquito Exposure in a Malaria-Endemic Area. Arthropod Vector: Controller of Disease Transmission, Volume 2, Elsevier, pp.209-229, 2017, ⟨10.1016/B978-0-12-805360-7.00012-5⟩. ⟨hal-02991250⟩
Christophe Paupy, Didier Fontenille, A.B. Failloux. Culicinae (Diptera : Culicidae). Entomologie médicale et vétérinaire, IRD; Quae, pp.243-294, 2017, Entomologie médicale et vétérinaire. ⟨hal-03002592⟩
D. G. Biron, D. Nedelkov, Dorothée Missé, Philippe Holzmuller. Proteomics and host-pathogen interactions: A bright future?. Genetics and Evolution of Infectious Diseases, ELSEVIER SCIENCE BV, 2017, 978-0-12-800153-0; 978-0-12-799942-5. ⟨10.1016/B978-0-12-799942-5.00011-1⟩. ⟨hal-02788859⟩
Marc Egrot, Aminata Ndiaye. Opérationnalisation du concept de genre. Agnès Adjamagbo et Bénédicte Gastineau. Le genre dans les recherches africanistes, Laboratoire Population-Environnement-Développement,. Les Impromptus du LPED 2, pp.80-93, 2017. ⟨hal-02065767⟩
Marc Egrot, Blandine Bila. Genre, maladie et médicament en Afrique de l’Ouest. Agnès Adjamagbo et Bénédicte Gastineau. Le genre dans les recherches africanistes, Laboratoire Population Environnement Développement, Aix-Marseille Université, pp.43-53, 2017, Les Impromptus du LPED 2, 979-10-96763-02-3. ⟨hal-02065766⟩
Marc Egrot, Daleb Abdoulaye Alfa, Francis Akindès, Dioumel Badji, Blandine Bila, et al.. Ebola et les sciences sociales. Expériences à partir du Réseau Ouest Africain Anthropologie des Maladies Émergentes. Transition humanitaire en Côte d’Ivoire, Thomas Fouquet et Virginie Troit (Dir.), Karthala, Devenir Humanitaire, Paris, 2017. ⟨hal-02064897⟩
Marc Egrot, Daleb Abdoulaye Alfa, Francis Akindès, Dioumel Badji, Blandine Bila, et al.. Ebola and the Social Sciences. Experiences from the West African Network for the Anthropology of Emerging Diseases. Thomas Fouquet et Virginie Troit, humanitarian transition in Côte d’Ivoire, Karthala, Devenir Humanitaire, Paris : 323-337., 2017. ⟨hal-02065758⟩
Christine Chevillon, Karine Huber. 5. Les tiques invasives. TIQUES ET MALADIES A TIQUES: BIOLOGIE, ECOLOGIE EVOLUTIVE & EPIDEMIOLOGIE, IRD Éditions, pp.141-164, 2016. ⟨hal-02152249⟩
Karen D. Mccoy, Christine Chevillon. 4. Structuration des populations et adaptation des tiques : implications en épidémiologie. TIQUES ET MALADIES A TIQUES: BIOLOGIE, ECOLOGIE EVOLUTIVE & EPIDEMIOLOGIE, IRD Éditions, pp.113-140, 2016. ⟨hal-02152241⟩
Michael C. Fontaine. Harbour Porpoises, Phocoena phocoena, in the Mediterranean Sea and Adjacent Regions: Biogeographic Relicts of the Last Glacial Period. Advances in Marine Biology, pp.333-358, 2016, ⟨10.1016/bs.amb.2016.08.006⟩. ⟨hal-02915884⟩
Florence Fournet, Z. Vaillant, A. Roudot, C. Gasquet-Blanchard, S. Rican, et al.. Urbanisation et maladies vectorielles à Libreville, Ouagadougou et Vientiane. Villes, Economica, pp.255-279, 2016, Villes. ⟨hal-03002600⟩
Maud Marsot, Thierry Hoch, Grégoire Perez, Elsa Léger, Hélène Verheyden, et al.. 8. Modification et modélisation du risque de maladies transmises par les tiques. Tiques et maladies à tiques : biologie, écologie évolutive, épidémiologie, IRD Editions, 338 p., 2016, Collection Didactiques, 9 782709 921008. ⟨hal-02799877⟩
Karine Huber, Christine Chevillon. Les tiques invasives. Tiques et maladies à tiques - Biologie, écologie évolutive, épidémiologie, Editions de l’IRD, 2016. ⟨hal-02799818⟩
Souleymane Doucoure, Sylvie Cornélie, Pape Drame, Alexandra Marie, Emmanuel Ndille, et al.. Biomarkers of Vector Bites: Arthropod Immunogenic Salivary Proteins in Vector-Borne Diseases Control. General Methods in Biomarker Research and their Applications. Biomarkers in Disease: Methods, Discoveries and Applications., pp.1177-1205, 2015, ⟨10.1007/978-94-007-7696-8_10⟩. ⟨hal-02991326⟩
Pierre-Olivier Methot, Samuel Alizon. Emerging diseases and the evolution of virulence: the case of the Spanish influenza pandemic. Marc Silberstein and Gérard Lambert and Philippe Huneman. Disease, Classification, and Evidence. New Essays in the Philosophy of Medicine, 7, Springer, pp.93-130, 2015, History, Philosophy and Theory of the Life Sciences, ⟨10.1007/978-94-017-8887-8_5⟩. ⟨hal-01567906⟩
Alice Desclaux, Marc Egrot. Le médicament diffusé au Sud : contextes, formes culturelles et effets sociaux observés depuis les marges : introduction. Alice Desclaux, Marc Egrot (dir.), Anthropologie du médicament au Sud. La pharmaceuticalisation à ses marges, L’Harmattan & Éditions de l’IRD, Collection Anthropologies et Médecines, Paris, 2015. ⟨ird-02066968⟩
Marc Egrot. Donner des médicaments : l'esprit du don en marge des logiques du soin. Alice Desclaux, Marc Egrot (dir.). Anthropologie du médicament au Sud : la pharmaceuticalisation à ses marges. L’Harmattan & Éditions de l’IRD, Collection Anthropologies et Médecines : 63-77, 2015. ⟨ird-02067052⟩
Alice Desclaux, Marc Egrot. Dynamiques de la pharmaceuticalisation au Sud : conclusion. Alice Desclaux, Marc Egrot (dir.). Anthropologie du médicament au Sud : la pharmaceuticalisation à ses marges. L’Harmattan & Éditions de l’IRD, Collection Anthropologies et Médecines : 251-272., 2015. ⟨ird-02067054⟩
Carine Baxerres, Marc Egrot, Roch Houngnihin, Jean-Yves Le Hesran. Dualité de l'accès au médicament en Afrique de l'Ouest : les CTA entre large distribution et consommation sous surveillance. Mamadou Badji, Alice Desclaux (dir.). Nouveaux enjeux éthiques autour du médicament en Afrique : analyses en anthropologie, droit et santé publique. Dakar : L'Harmattan-Sénégal, ISBN 9782343080727 : 141-158., 2015. ⟨ird-02067055⟩
Bernard Taverne, Marc Egrot. Enjeux locaux et globaux d'un "trafic" de médicaments antirétroviraux entre le Sénégal et l'Europe. Alice Desclaux, Marc Egrot (dir.). Anthropologie du médicament au Sud : la pharmaceuticalisation à ses marges. L’Harmattan & Éditions de l’IRD, Collection Anthropologies et Médecines : 113-127., 2015. ⟨ird-02067053⟩
M. Vittecoq, F. Thomas, F. Renaud, Michel Gauthier-Clerc. Avian Influenza Viruses. Reference Module in Earth Systems and Environmental Sciences, Elsevier, 9 p., 2014, ⟨10.1016/B978-0-12-409548-.09137-5⟩. ⟨hal-01066830⟩
Samuel Alizon. Evolution of Infectious Disease Virulence. Jonathan Losos. Evolutionary biology, Oxford Bibliographies, 2014, ⟨10.1093/OBO/9780199941728-0018⟩. ⟨hal-01567916⟩
Papa Drame, Anne Poinsignon, Alexandra Marie, Herbert Noukpo, Souleymane Doucoure, et al.. New Salivary Biomarkers of Human Exposure to Malaria Vector Bites. Anopheles mosquitoes - New insights into malaria vectors, InTech, 2013, ⟨10.5772/55613⟩. ⟨hal-02991309⟩
Frédéric Austerlitz, Michael Blum, Sarah Calba, Jérôme Chave, Marc Choisy, et al.. Ecologie prédictive & changement planétaire. Thiébault; Stéphanie and Hadi; Halima. Prospective de l'Institut écologie & environnement du CNRS, hors s\'rie, Institut écologie & environnement du CNRS, pp.9--44, 2013. ⟨hal-01911607⟩
Christine Chevillon, Thierry de Meeûs, Karen Mccoy. Population Genetics and Molecular Epidemiology of Infectious Diseases. New Frontiers in Molecular Epidemiology of Infectious Diseases, Springer Netherlands, pp.45-76, 2012. ⟨hal-02152261⟩
K. Dabiré, A. Diabaté, M. Namountougou, L. Djogbenou, C. Wondji, et al.. Trends in Insecticide Resistance in Natural Populations of Malaria Vectors in Burkina Faso, West Africa: 10 Years’ Surveys. Farzana Khan Perveen. Insecticides - Pest Engineering, InTech, pp.479-502, 2012, ⟨10.5772/28749⟩. ⟨hal-02989778⟩
Didier Fontenille, Thomas Balenghien, Daniel Bley, Jean-Claude Desenclos, Christophe Lagneau. Comment la recherche contribue−t−elle à l'amélioration de la lutte antivectorielle ?. Fontenille Didier et al. La lutte antivectorielle en France, +CD−ROM, IRD Éditions, pp.590-632, 2009, coll. Expertise collégiale. ⟨hal-01995133⟩
Philippe Cecchi, Aude Meunier-Nikiema, Nicolas Moiroux, Bakary Sanou. Towards an Atlas of Lakes and Reservoirs in Burkina Faso. Small reservoirs toolkit, 2009. ⟨hal-02968297⟩

Directions d'ouvrage, Proceedings1 document

Alice Desclaux, Marc Egrot. Anthropologie du médicament au Sud : la pharmaceuticalisation à ses marges. L’Harmattan & Éditions de l’IRD, Collection Anthropologies et Médecines. 2015. ⟨hal-02067051⟩

Brevets2 documents

Denis Sereno, Arnaud Cannet, Mohammad Akhoundi, Olivier Romain, Aymeric Histace. Système et procédé d'identification automatisée de diptères hématophages. France, N° de brevet: 10874WO. 2015. ⟨hal-01377545⟩
Denis Sereno, Gilles Labesse, Jean-François Guichon, Corinne Loeuillet, Deborah Gracia. New compounds for the treatment and/or prevention of parasitic diseases and method of production of thereof. France, Patent n° : EP N° 13177129.7. 2013. ⟨hal-00918009⟩

Autres publications7 documents

Patrick Criqui, Jean-François Guégan, Hervé Le Treut, Thierry Lebel, Franck Lecocq, et al.. La recherche sur les changements globaux à l'épreuve de la Covid-19. 2020, ⟨10.1016/S0140-⟩. ⟨halshs-03007073⟩
Alexis Drogoul, Patrick Taillandier, Benoit Gaudou, Marc Choisy, Kevin Chapuis, et al.. Designing social simulation to (seriously) support decision-making: COMOKIT, an agent-based modelling toolkit to analyse and compare the impacts of public health interventions against COVID-19. 2020. ⟨hal-02968321⟩
Benjamin Roche. Modeling jointly landscape complexity and environmental heterogeneity to envision new strategies for tsetse flies control. 2019, pp.100024. ⟨10.24072/pci.ecology.100024⟩. ⟨hal-02611834⟩
Samuel Alizon. Simulating the effect of public health interventions using dated virus sequences and geographical data. 2018, pp.100046. ⟨10.24072/pci.evolbiol.100046⟩. ⟨hal-01705816⟩
Marc Egrot. Anthropologie des objets de la lutte antivectorielle. Suds en ligne. Les dossiers thématiques de l'IRD : Vaincre le paludisme, 2012. ⟨ird-02069795⟩
Marc Egrot, Carine Baxerres. Représentations sociales du paludisme. 2012, pp.1-3. ⟨ird-02069681⟩
Frédéric Thomas. The Alarming Proximity of Parasites. 2010, pp.e1000526. ⟨10.1371/journal.pbio.1000526⟩. ⟨hal-02503980⟩

Pré-publications, Documents de travail27 documents

Paul Taconet, Angélique Porciani, Dieudonné Diloma Soma, Karine Mouline, Frédéric Simard, et al.. Data-driven and interpretable machine-learning modeling to explore the fine-scale environmental determinants of malaria vectors biting rates in rural Burkina Faso. 2021. ⟨hal-03202006⟩
Cédric Bationo, Jean Gaudart, Sokhna Dieng, Mady Cissoko, Paul Taconet, et al.. Spatio-temporal analysis and prediction of malaria cases using remote sensing meteorological data in Diébougou health district, Burkina Faso, 2016-2017. 2021. ⟨hal-03202020⟩
Ramsès Djidjou-Demasse, Mircea Sofonea, Marc Choisy, Samuel Alizon. Within-host evolutionary dynamics of antimicrobial quantitative resistance. 2021. ⟨hal-03194023⟩
Baptiste Elie˚, Christian Selinger, Samuel Alizon. The source of individual heterogeneity shapes infectious disease outbreaks. 2021. ⟨hal-03175555⟩
Samuel Alizon, Christian Selinger, Mircea Sofonea, Stéphanie Haim-Boukobza, Jean-Marc Giannoli, et al.. Epidemiological and clinical insights from SARS-CoV-2 RT-PCR cycle amplification values. 2021. ⟨hal-03175551⟩
Christian Selinger, Massilva Rahmoun, Carmen Lia Murall, Claire Bernat, Vanina Boué, et al.. Cytokine response following perturbation of the cervicovaginal milieu during HPV genital infection. 2021. ⟨hal-03175556⟩
Bastien Reyné, Christian Selinger, Mircea Sofonea, Stéphanie Miot, Amandine Pisoni, et al.. Wearing masks and establishing COVID-19 areas reduces secondary attack risk in nursing homes. 2021. ⟨hal-03175558⟩
Justine Boutry, Juliette Mistral, Alexander Klimovich, Jácint TÖkÖlyi, Laura Fontenille, et al.. Tumors (re)shape biotic interactions: evidence from the freshwater cnidarian Hydra. 2021. ⟨hal-03161205⟩
Thomas Bénéteau, Elie Baptiste, Mircea Sofonea, Samuel Alizon. Estimating dates of origin and end of COVID-19 epidemics. 2021. ⟨hal-03120811⟩
Léa Pradier, Anna-Sophie Fiston-Lavier, Stéphanie Bedhomme, Tazzio Tissot. PlasForest: a homology-based random forest classifier for plasmid detection in genomic datasets. 2021. ⟨hal-03098027⟩
Quentin Richard, Marc Choisy, Thierry Lefèvre, Ramsès Djidjou-Demasse. Human-vector malaria transmission model structured by age, time since infection and waning immunity. 2020. ⟨hal-03090649⟩
Xavier Grau-Bové, Eric Lucas, Dimitra Pipini, Emily Rippon, Arjèn Van’t Hof, et al.. Resistance to pirimiphos-methyl in West African Anopheles is spreading via duplication and introgression of the Ace1 locus. 2020. ⟨hal-02915392⟩
V. Sekar, Ana Rivero, R. Pigeault, S. Gandon, A. Drews, et al.. Gene regulation of the avian malaria parasite Plasmodium relictum, during the different stages within the mosquito vector. 2020. ⟨hal-03063914⟩
Ramsès Djidjou-Demasse, Arnaud Ducrot, Nicole Mideo, Gaëtan Texier. Understanding dynamics of Plasmodium falciparum gametocytes production: Insights from an age-structured model. 2020. ⟨hal-03030234⟩
Bastien Reyné, Gonché Danesh, Samuel Alizon, Mircea Sofonea. Rt2: computing and visualising COVID-19 epidemics temporal reproduction number. 2020. ⟨hal-03045490⟩
Camille Jacqueline, Jean-Philippe Parvy, Dominique Faugere, Francois Renaud, Dorothée Missé, et al.. Infection triggers tumor regression through activation of innate immunity in Drosophila. 2020. ⟨hal-02527549⟩
Yacine Ben Chehida, Roisin Loughnane, Julie Thumloup, Kristin Kaschner, Cristina Garilao, et al.. No leading-edge effect in North Atlantic harbor porpoises: Evolutionary and conservation implications. 2020. ⟨hal-03015895⟩
Britas Klemens Eriksson, Casey Yanos, Sarah Bourlat, Serena Donadi, Michael C. Fontaine, et al.. The rise of the three-spined stickleback – eco-evolutionary consequences of a mesopredator release. 2020. ⟨hal-02915393⟩
J. Daron, A. Boissiere, L. Boundenga, B. Ngoubangoye, S. Houze, et al.. Population genomic evidence of a Southeast Asian origin of Plasmodium vivax. 2020. ⟨hal-02915422⟩
Marie Louis, M Galimberti, Frederick Archer, Simon Berrow, Andrew Brownlow, et al.. Selection on ancestral genetic variation fuels parallel ecotype formation in bottlenose dolphins. 2020. ⟨hal-03020428⟩
Gonché Danesh, Baptiste Elie, Yannis Michalakis, Mircea Sofonea, Antonin Bal, et al.. Early phylodynamics analysis of the COVID-19 epidemic in France. 2020. ⟨hal-03001114⟩
Samuel Alizon. Treating symptomatic infections and the co-evolution of virulence and drug resistance. 2020. ⟨hal-03001103⟩
Philip Agnew. Estimating virulence from relative survival. 2020. ⟨hal-02987398⟩
Ramsès Djidjou-Demasse, Christian Selinger, Mircea Sofonea. Épidémiologie mathématique & modélisation de la pandémie de COVID-19 : enjeux et diversité. 2020. ⟨hal-02924338⟩
Yacine Ben Chehida, Julie Thumloup, Cassie Schumacher, Timothy Harkins, Alex Aguilar, et al.. Evolutionary history of the porpoises ( Phocoenidae ) across the speciation continuum: a mitogenome phylogeographic perspective. 2020. ⟨hal-02915433⟩
Mircea Sofonea, Bastien Reyné, Baptiste Elie, Ramsès Djidjou-Demasse, Christian Selinger, et al.. Epidemiological monitoring and control perspectives: application of a parsimonious modelling framework to the COVID-19 dynamics in France. 2020. ⟨hal-02619546⟩
R Djidjou-Demasse, Y. Michalakis, M Choisy, M. T. Sofonea, S. Alizon. Optimal COVID-19 epidemic control until vaccine deployment. 2020. ⟨hal-02533223⟩

Rapports13 documents

Samuel Alizon, Frédéric Cazals, Stéphane Guindon, Claire Lemaitre, Tristan Mary-Huard, et al.. SARS-CoV-2 Through the Lens of Computational Biology: How bioinformatics is playing a key role in the study of the virus and its origins. [Research Report] CNRS. 2021. ⟨hal-03170023⟩
Samuel Alizon, Yannis Michalakis, Mircea Sofonea. Évolution de la virulence et COVID-19. [Rapport de recherche] 12, Centre National de la Recherche Scientifique (CNRS); Institut de recherche pour le développement (IRD); Université de Montpellier (UM), FRA. 2020. ⟨hal-02950712⟩
Yannis Michalakis, Mircea Sofonea, Samuel Alizon. Les effets sexe spécifiques de COVID-19 en France et l’implication potentielle des déficits en G6PD. [Rapport de recherche] 11, Centre National de la Recherche Scientifique (CNRS); Institut de recherche pour le développement (IRD); Université de Montpellier (UM), FRA. 2020. ⟨hal-02950702⟩
Yannis Michalakis, Mircea Sofonea, Samuel Alizon. Les effets sexe spécifiques de COVID-19 en France pourraient-ils être expliqués par des comorbidités ?. [Rapport de recherche] 10, Centre National de la Recherche Scientifique (CNRS); Institut de recherche pour le développement (IRD); Université de Montpellier (UM), FRA. 2020. ⟨hal-02950676⟩
Samuel Alizon, Mircea Sofonea. Analyse de l’épidémie de COVID-19 en France et scénarios de contrôle. [Rapport de recherche] 9, Centre National de la Recherche Scientifique (CNRS); Institut de recherche pour le développement (IRD); Université de Montpellier (UM), FRA. 2020. ⟨hal-02950665⟩
Thomas Bénéteau, Baptiste Elie, Samuel Alizon, Mircea Sofonea. Stochasticité et épidémie de COVID-19. [Rapport de recherche] 8, Centre National de la Recherche Scientifique (CNRS); Institut de Recherche pour le Développement (IRD); Université de Montpellier (UM), FRA. 2020. ⟨hal-02950660⟩
Samuel Alizon, Mircea Sofonea, Yannis Michalakis. Modéliser l'épidémie de COVID-19 (résumé). [Rapport de recherche] 7, Centre National de la Recherche Scientifique (CNRS); Institut de recherche pour le développement (IRD); Université de Montpellier (UM), FRA. 2020. ⟨hal-02950651⟩
Gonché Danesh, Baptiste Elie, Samuel Alizon. Phylodynamique du COVID-19 en France : variations temporelles de la croissance épidémique. [Rapport de recherche] 6, Centre National de la Recherche Scientifique (CNRS); Institut de Recherche pour le Développement (IRD); Université de Montpellier (UM), FRA. 2020. ⟨hal-02882698⟩
Samuel Alizon, Bastien Reyné, Mircea Sofonea. Limites et délais dans l’estimation du nombre de reproduction. [Rapport de recherche] 5, Centre National de la Recherche Scientifique (CNRS); Institut de recherche pour le développement (IRD); Université de Montpellier (UM), FRA. 2020. ⟨hal-02882697⟩
Gonché Danesh, Baptiste Elie, Samuel Alizon. Phylodynamique du COVID-19 en France. [Rapport de recherche] 4, Centre National de la Recherche Scientifique (CNRS); Institut de Recherche pour le Développement (IRD); Université de Montpellier (UM), FRA. 2020. ⟨hal-02882688⟩
Samuel Alizon, Bastien Reyné, Christian Selinger. Modélisation de l’épidémie de COVID-19 : modèle SEAIR. [Rapport de recherche] 3, Centre national de la recherche scientifique (CNRS); Institut de Recherche pour le Développement (IRD); Université de Montpellier. 2020. ⟨hal-02882687⟩
Mircea Sofonea, Samuel Alizon. Immunité de groupe et contrôle de l’épidémie de COVID-19. [Rapport Technique] 2, Centre National de la Recherche Scientifique (CNRS); Institut de Recherche pour le Développement (IRD); Université de Montpellier (UM), FRA. 2020. ⟨hal-02882682⟩
Gonché Danesh, Samuel Alizon. Estimation du nombre de reproduction de l’épidémie de COVID-19 en France. [Rapport de recherche] 1, Centre national de la recherche scientifique (CNRS); Institut de recherche pour le développement (IRD); Université de Montpellier (UM), FRA. 2020. ⟨hal-02882680⟩

Thèses29 documents

Amadou Sékou Traore. Étude des déterminants génétiques, physiologiques et environnementaux des rythmes journaliers d’activité chez les anophèles vecteurs du Plasmodium. Maladies infectieuses. AgroParisTech, 2020. Français. ⟨NNT : 2020AGPT0005⟩. ⟨tel-03191602⟩
Manon Villa. Impact de l’utilisation des médicaments antipaludiques sur la transmission de Plasmodium sp.. Maladies infectieuses. Université Montpellier, 2020. Français. ⟨NNT : 2020MONTG042⟩. ⟨tel-03209997⟩
Serge Mazamay Ikony Engo. Dynamique spatio-temporelle et écologie des méningites bactériennes en dehors de la ceinture de la méningite en Afrique : cas de la République démocratique du Congo. Sciences agricoles. Université Montpellier; Université de Kinshasa, 2019. Français. ⟨NNT : 2019MONTG093⟩. ⟨tel-02866688⟩
Mahugnon Barnabas Zogo. Impact entomologique de stratégies complémentaires de lutte intégrée contre le paludisme dans un contexte de résistance des vecteurs aux insecticides au nord de la Côte d’Ivoire. Médecine humaine et pathologie. Université Montpellier; Université d'Abomey-Calavi (Bénin), 2019. Français. ⟨NNT : 2019MONTT056⟩. ⟨tel-02485637⟩
Florian Binetruy. Les communautés microbiennes au sein des populations de tiques : origine, diversité et structure. Sciences agricoles. Université Montpellier, 2019. Français. ⟨NNT : 2019MONTG038⟩. ⟨tel-02481231⟩
Taissa Pereira dos Santos. Invasion d’Aedes albopictus dans les milieux forestiers tropicaux et potentiel pour l’émergence de virus zoonotiques au Brésil. Médecine humaine et pathologie. Université Montpellier, 2019. Français. ⟨NNT : 2019MONTG012⟩. ⟨tel-02174873⟩
Silaphet Somphavong. Molecular epidemiology of Mycobacterium tuberculosis and antibiotic resistance in Lao PDR. Agricultural sciences. Université Montpellier, 2018. English. ⟨NNT : 2018MONTT097⟩. ⟨tel-02100060⟩
Emeline Sabourin. Dynamique de la fasciolose dans un système fortement anthropisé : la Camargue. Microbiologie et Parasitologie. Université Montpellier, 2018. Français. ⟨NNT : 2018MONTG047⟩. ⟨tel-01976817⟩
Margaux Mulatier. Interactions entre l’état physiologique du moustique et le mode d’action des répulsifs chez les vecteurs de pathogènes. Parasitologie. Université Montpellier, 2018. Français. ⟨NNT : 2018MONTG032⟩. ⟨tel-01946709⟩
Phubeth Ya-Umphan. Etude du risque de transmission du paludisme le long de la frontière birmano-thaïlandaise par l’utilisation de biomarqueurs spécifiques d’exposition humaine aux piqures d’Anopheles et au Plasmodium. Médecine humaine et pathologie. Université Montpellier, 2017. Français. ⟨NNT : 2017MONTT138⟩. ⟨tel-01716307⟩
Victor Chaumeau. Déterminants entomologiques de la transmission du paludisme dans la zone transfrontalière entre la Thaïlande et le Myanmar dans un contexte d'élimination de Plasmodium falciparum. Médecine humaine et pathologie. Université Montpellier, 2017. Français. ⟨NNT : 2017MONTT047⟩. ⟨tel-01684277⟩
Tazzio Tissot. Une approche multi-échelle des processus écologiques et évolutifs impliqués dans le cancer. Evolution [q-bio.PE]. Université Montpellier, 2017. Français. ⟨NNT : 2017MONTT130⟩. ⟨tel-01707407⟩
Mircea Sofonea. Évolution de la virulence et infections multiples. Biologie animale. Université Montpellier, 2017. Français. ⟨NNT : 2017MONTT114⟩. ⟨tel-01704686⟩
Milène Sasso. Candidoses invasives en réanimation : données épidémiologiques, élaboration d’un score prédictif et mise au point de PCR pour le diagnostic. Médecine humaine et pathologie. Université Montpellier, 2017. Français. ⟨NNT : 2017MONTT008⟩. ⟨tel-01583954⟩
Lauriane Sollelis. Dynamique de la réplication de l’ADN et complexe pré-réplicatif chez Leishmania sp.. : apport du système CRISPR/Cas9. Médecine humaine et pathologie. Université Montpellier, 2016. Français. ⟨NNT : 2016MONTT062⟩. ⟨tel-01559354⟩
Quang Huy Nguyen. Genetic determinants and evolution of drug resistance in Mycobacterium tuberculosis in Vietnam : toward new diagnostic tools. Human health and pathology. Université Montpellier, 2016. English. ⟨NNT : 2016MONTT081⟩. ⟨tel-01560449⟩
Marlène Dupraz. Convergence dans l'évolution de la spécialisation d'hôte chez des tiques : modèle tiques-oiseaux de mer à distribution mondiale. Biologie animale. Université Montpellier, 2016. Français. ⟨NNT : 2016MONTT124⟩. ⟨tel-01646821⟩
Saïd Chaouki Boubidi. Surveillance et contrôle du moustique tigre, Aedes albopictus (Skuse, 1894) à Nice, sud de la France. Santé. Université Montpellier, 2016. Français. ⟨NNT : 2016MONTT118⟩. ⟨tel-01646538⟩
Judicaël Obame-Nkoghe. Caractérisation de l'entomofaune hématophage cavernicole du Gabon et implication dans la transmission d'agents infectieux. Microbiologie et Parasitologie. Université Montpellier, 2016. Français. ⟨NNT : 2016MONTT159⟩. ⟨tel-01686281⟩
Abel Sènagbè Biguezoton. Invasion biologique & écologie de la santé vétérinaire : le cas des communautés de tiques et pathogènes associés au Bénin et au Burkina Faso à l’heure de leur invasion par la tique du bétail Rhipicephalus (Boophilus) microplus. Médecine vétérinaire et santé animale. Université Montpellier; Université d'Abomey-Calavi (Bénin), 2016. Français. ⟨NNT : 2016MONTT115⟩. ⟨tel-01646550⟩
Solange Meyin a Ebong. Punaises aquatiques du Cameroun : biodiversité, phylogéographie et rôle dans l’écologie de Mycobacterium ulcerans, agent étiologique de l’ulcère de Buruli. Microbiologie et Parasitologie. Université Montpellier; Université de Yaoundé I, 2015. Français. ⟨NNT : 2015MONTS273⟩. ⟨tel-02446401⟩
Jorian Prudhomme. Phlébotomes et écosystèmes : impact des facteurs biotiques et abiotiques sur la structure génétique et phénotypique des populations. Parasitologie. Université Montpellier, 2015. Français. ⟨NNT : 2015MONTS027⟩. ⟨tel-01414996⟩
Romain Pigeault. Ecologie évolutive des interactions Hôte / Moustique / Plasmodium : sources d’hétérogénéité de l’infection des vecteurs. Parasitologie. Université Montpellier, 2015. Français. ⟨NNT : 2015MONTS025⟩. ⟨tel-01402347⟩
Antonio A. Vazquez Perera. Interaction hôte – parasite en contexte insulaire : relations entre Fasciola hepatica (Trematoda) et les mollusques Galba cubensis et Pseudosuccinea columella (Gastropoda) sur l’île de Cuba. Parasitologie. Université Montpellier, 2015. Français. ⟨NNT : 2015MONTS084⟩. ⟨tel-01646808⟩
Benoît Randuineau. Interactions between pathgogens: What are the impacts on public health ?. Santé publique et épidémiologie. Université Paris VI, 2015. English. ⟨tel-01237856⟩
Kevin Carolan. Ecological niche modelling and its application to environmentally acquired diseases, the case of Mycobacterium ulcerans and the Buruli ulcer. Infectious diseases. Université Montpellier II - Sciences et Techniques du Languedoc, 2014. English. ⟨NNT : 2014MON20178⟩. ⟨tel-01818034⟩
Nicolas Moiroux. Modélisation du risque d'exposition aux moustiques vecteurs de Plasmodium spp. dans un contexte de lutte anti-vectorielle.. Ecologie, Environnement. Université Montpellier II - Sciences et Techniques du Languedoc, 2012. Français. ⟨tel-00812118⟩
Diane-Ethna Mbang-Benet. Exploration fonctionnelle de protéines mitochondriales et étude du protéasome 'mitochondrial' HslVU, cible thérapeutique potentielle, chez les Trypanosomatidés.. Génomique, Transcriptomique et Protéomique [q-bio.GN]. Université Montpellier 1, 2012. Français. ⟨tel-03200082⟩
Samuel Alizon. Évolution de la virulence des parasites : apports des modèles emboîtés. Evolution [q-bio.PE]. Université Pierre et Marie Curie (Paris VI), 2006. Français. ⟨tel-01638064⟩

Habilitations à diriger des recherches1 document

Samuel Alizon. Dynamics and evolution of infectious diseases. Populations and Evolution [q-bio.PE]. Université Montpellier 2, 2013. ⟨tel-01638065⟩

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